Time/Day | Event | Speaker/Details |
---|---|---|
8:30-9:30 | Registration | The Commons, Yonsei University |
9:25-9:30 | Opening | |
9:30-10:30 | Keynote 1: From Petabytes to Insights: Scaling Sequence Bioinformatics with Logan | Rayan Chikhi, Institut Pasteur |
10:30-10:45 | Coffee break | |
Session 1: Long talks - Proceedings | ||
10:45-11:10 | Tile-X: A vertex reordering approach for scalable long read assembly [Proceedings] | Oieswarya Bhowmik, Washington State University |
11:10-11:35 | Run-length compressed metagenomic read classification with SMEM-finding and tagging [Proceedings] | Lore Depuydt, Ghent University |
11:35-12:00 | Alignment-Free Detection of Differences Between Sequencing Data Sets [Proceedings] | Alessia Petescia Comenius, University in Bratislava |
12:00-13:30 | Lunch / Poster viewing | |
Session 2: Short talks | ||
13:30-13:40 | Metrics Matter: Why We Need to Stop Using Silhouette in Single-Cell Benchmarking | Pia Rautenstrauch, MDC Berlin |
13:40-13:50 | Full length isoform reconstruction in single cell data | Marie Van Hecke, Ghent University - imec |
13:50-14:00 | Masked superstrings as a compact, indexable, and dynamic representation of unconstrained k-mer sets | Pavel Veselý, Charles University |
14:00-14:10 | Automated Annotation of Satellite DNA | Alex Sweeten, Johns Hopkins University |
14:10-14:30 | Break | |
Session 3: Short talks | ||
14:30-14:40 | b-move: Faster Lossless Approximate Pattern Matching in a Run-Length Compressed Index | Lore Depuydt, Ghent University |
14:40-14:50 | strangepg: Toward Pangenome Scale Graph Visualization | Konstantinn Bonnet, Heinrich Heine University |
14:50-15:00 | Improved variant calling via latent breakpoint graphs | |
15:00-15:10 | A Novel K-mer Masking Approach for Improving Specificity in Metagenomic Pathogen Detection | Joanne Qiu, UCLA |
15:10-16:30 | Posters | |
Session 4: Long talks - Overlay | ||
16:30-16:55 | DeepMM: Identify and correct Metagenome Misassemblies with deep learning [Overlay] | Ding Yi, Hong Kong Baptist University |
16:55-17:20 | GPU-accelerated homology search with MMseqs2 [Overlay] | Milot Mirdita, Seoul National University |
17:20-17:45 | On the Coverage Required for Diploid Genome Assembly [Overlay] | Chirag Jain, Indian Institute of Science |
17:45:00 | Satellites reception |
Time/Day | Event | Speaker/Details |
---|---|---|
8:30-9:30 | Registration | The Commons, Yonsei University |
9:25-9:30 | Opening | |
9:30-10:30 | Keynote 2: Single cells and long reads: Transcriptomes at exquisite resolution | Alicia Oshlack, Peter MacCallum Cancer Center |
10:30-10:45 | Coffee break | |
Session 5: Long talks - Proceedings | ||
10:45-11:10 | Decoding the causal drivers of spatial cellular topology [Proceedings] | Rohit Singh, Duke |
11:10-11:35 | Efficient trace reconstruction in DNA storage systems using Bidirectional Beam Search [Proceedings] | Gu Zhenhao, National University of Singapore |
11:35-12:00 | Decoupling Hi-C matrices with non-negative matrix factorization to reveal assorted TADs [Proceedings] | Zhao Ling, City university of HongKong |
12:00-13:30 | Lunch / Poster viewing | |
Session 6: Short talks | ||
13:30-13:40 | Pre-Training Dataset Deduplication Improves Genomic LLMs | Mahler Revsine, Johns Hopkins University |
13:40-13:50 | Edgecopy: Accurate CNV calling in duplicated genes using whole-exome sequencing | Sang Yoon Byun, University of California San Diego |
13:50-14:00 | Vizitig: context-rich exploration of sequencing datasets | Camille Marchet, Université de Lille - CNRS |
14:00-14:10 | Inverted colored de Bruin Graph for practical kmer set storage | Timothé Rouzé, Institut Pasteur |
14:10-14:30 | Break | |
Session 7: Short talks | ||
14:30-14:40 | Reindeer2: practical abundance index at scale | Camille Marchet, Université de Lille - CNRS |
14:40-14:50 | Multi-sample, multi-platform isoform quantification using empirical Bayes | Arghamitra Talukder, Columbia University |
14:50-15:00 | Efficient algorithm for resolving scenarios of Complex Chromosomal Rearrangements | Barbara Poszewiecka, University of Warsaw |
15:00-15:10 | De Bruijn Graphs for Pangenomics: In-depth Performance Benchmarking of de Bruijn Graph-Based Tools for Read Mapping | Zülal Bingöl, Bilkent University |
15:10-16:30 | Posters | |
Session 8: Long talks - Overlay | ||
16:30-16:55 | Pangenome graph augmentation from unassembled long reads [Overlay] | Luca Denti, Comenius University in Bratislava |
16:55-17:20 | De novo clustering of extensive long-read transcriptome datasets with isONclust3 [Overlay] | Alexander Petri, Stockholm University |
17:20-17:45 | Multi-context seeds enable fast and high-accuracy read mapping [Overlay] | |
17:45:00 | RECOMB reception |