Time/Day | Event | Speaker/Details |
---|---|---|
8:30-9:30 am | Registration | The Commons, Yonsei University |
9:25-9:30 am | Opening | B125 Grand Ballroom |
9:30-10:30 am | Keynote 1: From Petabytes to Insights: Scaling Sequence Bioinformatics with Logan | Rayan Chikhi, Institut Pasteur |
10:30-10:45 am | Coffee break | |
Session 1: Long talks - Proceedings | Session chair: Rayan Chikhi | |
10:45-11:10 am | Tile-X: A vertex reordering approach for scalable long read assembly [Proceedings, remote] | Oieswarya Bhowmik, Washington State University |
11:10-11:35 am | Run-length compressed metagenomic read classification with SMEM-finding and tagging [Proceedings] | Lore Depuydt, Ghent University |
11:35-12:00 am | Alignment-Free Detection of Differences Between Sequencing Data Sets [Proceedings] | Alessia Petescia Comenius, University in Bratislava |
12:00-1:30 pm | Lunch / Poster viewing (odd numbers) | |
Session 2: Short talks | Session chair: Milot Mirdita | |
1:30-1:42 pm | Metrics Matter: Why We Need to Stop Using Silhouette in Single-Cell Benchmarking | Pia Rautenstrauch, MDC Berlin |
1:42-1:54 pm | Full length isoform reconstruction in single cell data | Marie Van Hecke, Ghent University - imec |
1:55-2:07 pm | Masked superstrings as a compact, indexable, and dynamic representation of unconstrained k-mer sets | Pavel Veselý, Charles University |
2:07-2:19 pm | Automated Annotation of Satellite DNA | Alex Sweeten, Johns Hopkins University |
2:20-2:40 pm | Break | |
Session 3: Short talks | Session chair: Chirag Jain | |
2:40-2:52 pm | b-move: Faster Lossless Approximate Pattern Matching in a Run-Length Compressed Index | Lore Depuydt, Ghent University |
2:52-3:04 pm | strangepg: Toward Pangenome Scale Graph Visualization | Konstantinn Bonnet, Heinrich Heine University |
3:05-3:17 pm | Improved variant calling via latent breakpoint graphs | Megan Le, Broad Institute |
3:17-3:29 pm | A Novel K-mer Masking Approach for Improving Specificity in Metagenomic Pathogen Detection | Joanne Qiu, UCLA |
3:30-3:45 pm | Break | |
Session 4: Long talks - Overlay | Session chair: Pavel Veselý | |
3:45-4:10 pm | DeepMM: Identify and correct Metagenome Misassemblies with deep learning [Overlay] | Ding Yi, Hong Kong Baptist University |
4:10-4:35 pm | GPU-accelerated homology search with MMseqs2 [Overlay] | Milot Mirdita, Seoul National University |
4:35-5:00 pm | On the Coverage Required for Diploid Genome Assembly [Overlay] | Chirag Jain, Indian Institute of Science |
5:00-5:15 pm | Poster highlights (odd numbers) | |
5:15 pm | Poster viewing (odd numbers) | Slots 101 to 120 |
Time/Day | Event | Speaker/Details |
---|---|---|
8:30-9:30 am | Registration | The Commons, Yonsei University |
9:25-9:30 am | Opening | B125 Grand Ballroom |
9:30-10:30 am | Keynote 2: Single cells and long reads: Transcriptomes at exquisite resolution | Alicia Oshlack, Peter MacCallum Cancer Center |
10:30-10:45 am | Coffee break | |
Session 5: Long talks - Proceedings | Session chair: Alicia Oshlack | |
10:45-11:10 am | Decoding the causal drivers of spatial cellular topology [Proceedings] | Rohit Singh, Duke |
11:10-11:35 am | Efficient trace reconstruction in DNA storage systems using Bidirectional Beam Search [Proceedings] | Gu Zhenhao, National University of Singapore |
11:35-12:00 am | Decoupling Hi-C matrices with non-negative matrix factorization to reveal assorted TADs [Proceedings] | Zhao Ling, City university of HongKong |
12:00-1:30 pm | Lunch / Poster viewing (even numbers) | |
Session 6: Short talks | Session chair: Rohit Singh | |
1:30-1:42 pm | Pre-Training Dataset Deduplication Improves Genomic LLMs | Mahler Revsine, Johns Hopkins University |
1:42-1:54 pm | Edgecopy: Accurate CNV calling in duplicated genes using whole-exome sequencing | Sang Yoon Byun, University of California San Diego |
1:55-2:07 pm | Reindeer2: practical abundance index at scale | Camille Marchet, Université de Lille - CNRS |
2:07-2:19 pm | Inverted colored de Bruin Graph for practical kmer set storage | Timothé Rouzé, Institut Pasteur |
2:20-2:40 pm | Coffee break | |
Session 7: Short talks | Session chair: Luca Denti | |
2:40-2:52 pm | Vizitig: context-rich exploration of sequencing datasets | Camille Marchet, Université de Lille - CNRS |
2:52-3:04 pm | Multi-sample, multi-platform isoform quantification using empirical Bayes | Arghamitra Talukder, Columbia University |
3:05-3:17 pm | Efficient algorithm for resolving scenarios of Complex Chromosomal Rearrangements | Barbara Poszewiecka, University of Warsaw |
3:17-3:29 pm | De Bruijn Graphs for Pangenomics: In-depth Performance Benchmarking of de Bruijn Graph-Based Tools for Read Mapping | Zülal Bingöl, Bilkent University |
3:30-3:45 pm | Coffee break | |
Session 8: Long talks - Overlay | Session chair: Yaron Orenstein | |
3:45-4:10 pm | Pangenome graph augmentation from unassembled long reads [Overlay] | Luca Denti, Comenius University in Bratislava |
4:10-4:35 pm | De novo clustering of extensive long-read transcriptome datasets with isONclust3 [Overlay] | Alexander Petri, Stockholm University |
4:35-5:00 pm | Multi-context seeds enable fast and high-accuracy read mapping [Overlay] | Ivan Tolstoganov, Stockholm University |
5:00-5:15 pm | Poster highlights (even numbers) | |
5:15 pm | Poster viewing (even numbers) | Slots 101 to 120 |